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Title: Expression profiling of adult mouse brain and liver tissues (RNA-seq)      
dateReleased:
01-31-2017
description:
We carried out total RNA sequencing on RNA extracted from 5 brain subregions (cerebellum, cortex, hippocampus, hypothalamus and thalamus) and liver tissues of wild-type mice at 3 months of age. In total, two female and two male mice were used to obtain biological replicates for appropriate statistical analysis. Not only is this dataset used to perform expression analysis between brain subregions and between brain and liver, it is also used in-conjunction with 5hmC-seq methylation profiles that we performed to study the association between 5hmC and gene expression. Stranded RNA-seq library was prepared and sequenced on a HiSeq2500 by single end sequencing with 100 bp read length.
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-MTAB-5166
refinement:
raw
dateSubmitted:
06-11-2015
keywords:
functional genomics
dateModified:
01-15-2017
availability:
available
types:
gene expression
name:
Mus musculus
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-5166/E-MTAB-5166.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-5166/E-MTAB-5166.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress

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