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Title: RNA-Seq analysis of transcriptomes of B. amyloliquefaciens FZB42 in biofilm formation and planktonic cells      
dateReleased:
03-16-2017
description:
This experiment compares the transcriptomes of B. amyloliquefaciens FZB42 cells in biofilm formation and in planktonic cells focusing on transcripts that were most affected in their transcription. The aim of the experiment was determination of the highest expressed genes in both cultures using RPKM values and comparison of relative transcription rates using DeSeq analysis.
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-MTAB-4362
refinement:
raw
dateSubmitted:
04-22-2013
keywords:
functional genomics
dateModified:
03-06-2017
creators:
Magdalena Krber
availability:
available
types:
gene expression
name:
Bacillus amyloliquefaciens
name:
growth condition design
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-4362/E-MTAB-4362.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-4362/E-MTAB-4362.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress

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